Dylan never apologized or recanted his work on "Hurricane".

In fact he re-mixed, it modifying the lyrics to placate Columbia records lawyers.

They worried about the phrase"robbed the bodies" being applied to Bello and Bradley.
They were never accused of those acts.

Other than that,Dylan continued to perform the song in concert until the end of the Rolling Thunder Review.
He cited both the length and technical aspects for not continuing to play it,as well as his belief that the song had served it's purpose.