OK, Danito, I'll play along.
Hard to remember now, but I had not read the novel before I first saw the film, so I'm sure there were many things that were unclear to me.
Some were (I think):
1. How Vito knew that Barzini was his true enemy.
2. How Don T. knew that Michael's emenies knew he was in Sicily.
3. How Sollozzo knew that Luca was a spy.
4. Who Neri was and where he came from.
5. Why it was "smarter" for Tessio to turn traitor.